STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aboo_0810KEGG: pfu:PF0213 hypothetical protein. (260 aa)    
Predicted Functional Partners:
Aboo_0809
PFAM: amidohydrolase; KEGG: tac:Ta1060m metal-dependent hydrolase.
       0.586
Aboo_0314
PFAM: peptidase M50; KEGG: tac:Ta1274 sterol-regulatory element-binding proteins intramembrane protease related protein.
  
  
 0.497
rnz
Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
     
 0.470
Aboo_0983
Fe-S oxidoreductase-like protein; KEGG: mba:Mbar_A0950 iron-sulfur binding reductase.
 
     0.459
Aboo_1534
PFAM: Protein of unknown function DUF54; KEGG: afu:AF2318 hypothetical protein.
 
     0.440
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.