STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aboo_0815PFAM: ABC-2 type transporter; KEGG: tvo:TVN0166 ABC transporter permease. (269 aa)    
Predicted Functional Partners:
Aboo_0816
ABC transporter related protein; KEGG: pto:PTO0472 ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 
 0.929
Aboo_0819
PFAM: transcriptional regulator PadR family protein; KEGG: smr:Smar_0758 PadR family transcriptional regulator.
       0.790
Aboo_0818
PFAM: protein of unknown function DUF1648; KEGG: tko:TK1923 hypothetical protein.
       0.777
Aboo_0817
KEGG: hypothetical protein.
       0.773
Aboo_0174
KEGG: tpe:Tpen_1475 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 
 0.702
Aboo_0784
KEGG: fps:FP0252 gliding motility protein GldA; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 
 0.702
Aboo_0830
KEGG: mac:MA2215 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 
 0.702
Aboo_1128
KEGG: tsi:TSIB_1441 ATP-binding transport protein; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 
 0.702
gyrB
DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
       0.588
gyrA
DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
       0.554
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
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