STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aboo_0872Transcriptional regulator, AsnC family; KEGG: tsi:TSIB_0449 HTH-type transcriptional regulator LrpA; PFAM: Transcription regulator, AsnC-type-like; Helix-turn-helix type 11 domain protein; SMART: Transcription regulator, AsnC-type. (140 aa)    
Predicted Functional Partners:
sfsA
KEGG: mbu:Mbur_0085 sugar fermentation stimulation protein; TIGRFAM: sugar fermentation stimulation protein; PFAM: sugar fermentation stimulation protein; Belongs to the SfsA family.
       0.773
Aboo_0870
KEGG: pho:PH1733 aspartate racemase; TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase.
     
 0.745
Aboo_0873
KEGG: kcr:Kcr_0340 flavin reductase domain-containing protein; PFAM: flavin reductase domain protein FMN-binding; SMART: flavin reductase domain protein FMN-binding.
       0.550
Aboo_0874
PFAM: Rubrerythrin; KEGG: tsi:TSIB_1892 rubrerythrin-related protein.
       0.545
Aboo_0878
PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: tko:TK0523 rubrerythrin.
     
 0.536
Aboo_0876
PFAM: flavodoxin/nitric oxide synthase; KEGG: dth:DICTH_1660 nitric oxide reductase.
     
 0.523
Aboo_0875
Rubredoxin-type Fe(Cys)4 protein; Rubredoxin is a small nonheme, iron protein lacking acid- labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.
       0.521
Aboo_0877
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: taf:THA_712 bacterioferritin comigratory protein.
     
 0.515
Aboo_0879
Ferroxidase; KEGG: taf:THA_1588 ferritin; PFAM: Ferritin Dps family protein.
       0.493
Aboo_0880
PFAM: Desulfoferrodoxin ferrous iron-binding region; KEGG: ton:TON_0868 sor superoxide reductase.
     
 0.493
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
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