STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aboo_0968KEGG: ent:Ent638_3374 citrate lyase subunit gamma. (80 aa)    
Predicted Functional Partners:
Aboo_0969
KEGG: hor:Hore_04680 citrate (pro-3S)-lyase, beta subunit; PFAM: HpcH/HpaI aldolase.
  
  
 0.999
Aboo_0970
TIGRFAM: citrate lyase, alpha subunit; KEGG: ctc:CTC02559 citrate lyase alpha chain; PFAM: Citrate lyase alpha subunit.
     
 0.778
Aboo_0967
PFAM: major facilitator superfamily MFS_1; KEGG: tga:TGAM_1161 permease, major facilitator superfamily.
       0.554
Aboo_0985
Malate dehydrogenase (oxaloacetate-decarboxylating); KEGG: pho:PH1275 malate oxidoreductase; PFAM: malic protein NAD-binding; malic protein domain protein.
  
  
 0.490
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.