STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aboo_1010KEGG: tga:TGAM_0453 GTPase subunit of restriction endonuclease; PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase. (765 aa)    
Predicted Functional Partners:
Aboo_1011
PFAM: 5-methylcytosine restriction system component-like protein; KEGG: mhu:Mhun_1299 McrBC 5-methylcytosine restriction system component-like.
 
 
 0.999
dnaK
Chaperone protein DnaK; Acts as a chaperone.
  
 0.741
Aboo_1012
Hypothetical protein; KEGG: cma:Cmaq_0787 DNA-directed RNA polymerase, M/15 kDa subunit.
  
   0.669
Aboo_1312
PFAM: Ribosomal protein L40e; KEGG: mka:MK0641 50S ribosomal protein L40e.
   
 0.652
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.
  
  0.621
Aboo_0110
PFAM: molybdopterin biosynthesis MoaE protein; KEGG: tga:TGAM_0172 MoaE molybdopterin synthase, large chain (MoaE).
   
  
 0.615
Aboo_0314
PFAM: peptidase M50; KEGG: tac:Ta1274 sterol-regulatory element-binding proteins intramembrane protease related protein.
  
 0.603
Aboo_0532
Galactokinase; KEGG: pho:PH0369 galactokinase; TIGRFAM: galactokinase; PFAM: GHMP kinase; Galactokinase galactose-binding domain; GHMP kinase domain protein.
    
 
 0.595
pcn
Proliferating cell nuclear antigen PcnA; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication.
  
 
 0.581
Aboo_1274
KEGG: pab:PAB2147 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.
   
 0.559
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.