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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aboo_1024KEGG: pto:PTO0050 hypothetical protein; TIGRFAM: CRISPR-associated RAMP protein, Csm5 family; PFAM: protein of unknown function DUF324. (380 aa)    
Predicted Functional Partners:
Aboo_1026
KEGG: mth:MTH1080 hypothetical protein; TIGRFAM: CRISPR-associated RAMP protein, Csm3 family; PFAM: protein of unknown function DUF324.
  
 
 0.999
Aboo_1027
KEGG: mth:MTH1081 hypothetical protein; TIGRFAM: CRISPR-associated protein, Csm2 family; PFAM: CRISPR-associated protein TM1810 domain protein.
  
 
 0.999
Aboo_1028
CRISPR-associated protein, Csm1 family; KEGG: pto:PTO0053 HD domain-containing protein; TIGRFAM: CRISPR-associated protein, Csm1 family; PFAM: metal-dependent phosphohydrolase HD sub domain.
  
 
 0.996
Aboo_1025
TIGRFAM: CRISPR-associated RAMP protein, Csm4 family; KEGG: fno:Fnod_1391 CRISPR-associated RAMP Csm4 family protein.
  
 
 0.994
Aboo_1029
SMART: AAA ATPase; KEGG: tye:THEYE_A0178 hypothetical protein.
       0.604
Aboo_1030
Hypothetical protein.
       0.415
Aboo_1031
KEGG: sss:SSUSC84_1343 hypothetical protein.
       0.401
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
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