STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aboo_1082Response regulator receiver protein; KEGG: aae:aq_1117 NtrC family transcriptional regulator; PFAM: response regulator receiver; SMART: response regulator receiver. (194 aa)    
Predicted Functional Partners:
Aboo_0497
Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; GAF domain protein; KEGG: afu:AF2109 signal-transducing histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; GAF domain protein.
 
 
 
 0.945
Aboo_0120
Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; GAF domain protein; KEGG: cts:Ctha_2310 PAS/PAC sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; GAF domain protein.
 
 
 0.937
Aboo_1081
KEGG: afu:AF1043 hypothetical protein.
   
 
 0.886
Aboo_1536
KEGG: afu:AF1384 response regulator; PFAM: response regulator receiver; SMART: response regulator receiver.
  
     0.683
Aboo_1083
KEGG: smr:Smar_0384 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
       0.556
Aboo_1320
PFAM: flagellin; KEGG: mbu:Mbur_1572 putative flagellar protein G.
  
    0.521
Aboo_0056
Hypothetical protein; KEGG: rca:Rcas_3883 multi-sensor hybrid histidine kinase.
   
 
 0.519
Aboo_0659
KEGG: afu:AF1043 hypothetical protein.
   
 
 0.517
rbcL
Ribulose bisphosphate carboxylase, type III; Catalyzes the addition of molecular CO(2) and H(2)O to ribulose 1,5-bisphosphate (RuBP), generating two molecules of 3- phosphoglycerate (3-PGA). Functions in an archaeal AMP degradation pathway, together with AMP phosphorylase and R15P isomerase. Belongs to the RuBisCO large chain family. Type III subfamily.
       0.503
Aboo_1125
PFAM: Polyprenyl synthetase; KEGG: tvo:TVN0262 geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
 
  
 0.410
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
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