STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aboo_1095PFAM: protein of unknown function DUF6 transmembrane; KEGG: dat:HRM2_35470 RhaT. (282 aa)    
Predicted Functional Partners:
Aboo_1094
PFAM: diacylglycerol kinase; KEGG: mar:MAE_39670 diacylglycerol kinase.
     
 0.730
Aboo_1093
KEGG: mmx:MmarC6_0609 ATP binding protein; TIGRFAM: ATP binding protein; PFAM: protein of unknown function DUF71 ATP-binding region.
       0.723
Aboo_1096
Hypothetical protein; KEGG: fnu:FN0345 permease.
       0.435
rpoH
RNA polymerase Rpb5; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoH/eukaryotic RPB5 RNA polymerase subunit family.
  
    0.429
Aboo_1091
DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
     
 0.425
rpoA2
DNA-directed RNA polymerase, subunit A'; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
    0.424
Aboo_1090
DNA-directed RNA polymerase subunit A; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
    0.424
nusA
NusA family KH domain protein; Participates in transcription termination. Belongs to the NusA family.
  
    0.422
Aboo_1088
PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: rci:LRC359 50S ribosomal protein L30E.
       0.408
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.