STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aboo_1122PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: mbu:Mbur_0206 phosphoesterase, RecJ-like protein. (281 aa)    
Predicted Functional Partners:
pfdB
Prefoldin, beta subunit; Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding.
       0.814
Aboo_1124
PFAM: Protein of unknown function DUF2144; KEGG: mtp:Mthe_1358 hypothetical protein.
       0.814
Aboo_1125
PFAM: Polyprenyl synthetase; KEGG: tvo:TVN0262 geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
  
    0.695
infB
Translation initiation factor aIF-2; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2.
 
  
 0.686
pyrB
TIGRFAM: aspartate carbamoyltransferase; KEGG: pfu:PF0599 aspartate carbamoyltransferase catalytic subunit; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region.
       0.682
pyrI
Aspartate carbamoyltransferase, regulatory subunit; Involved in allosteric regulation of aspartate carbamoyltransferase.
       0.680
rpl15e
PFAM: Ribosomal protein L15e; KEGG: mvu:Metvu_0558 ribosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family.
       0.617
Aboo_1382
PFAM: chromosome segregation and condensation protein ScpA; KEGG: tsi:TSIB_0723 segregation and condensation protein A.
 
    0.558
Aboo_1426
TOPRIM domain protein; KEGG: tye:THEYE_A1949 hypothetical protein; PFAM: TOPRIM domain protein; SMART: Toprim sub domain protein.
 
   
 0.532
rrp4
K-like, type 1, subgroup; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome.
 
     0.495
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.