STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aboo_1136KEGG: tro:trd_1793 alanyl-tRNA synthetase; PFAM: Threonyl/alanyl tRNA synthetase SAD; Alanyl-tRNA synthetase, class IIc-like; SMART: Threonyl/alanyl tRNA synthetase SAD. (233 aa)    
Predicted Functional Partners:
pheS
TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; KEGG: mja:MJ0487 phenylalanyl-tRNA synthetase subunit alpha; PFAM: phenylalanyl-tRNA synthetase class IIc; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 2 subfamily.
 
  
 0.813
atpD
V-type ATPase, D subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
       0.686
Aboo_1135
TIGRFAM: glutamate formiminotransferase; KEGG: hypothetical protein; PFAM: Formiminotransferase domain protein; Formiminotransferase domain protein; Formiminotransferase-cyclodeaminase.
       0.668
leuS
KEGG: smr:Smar_0118 leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.652
Aboo_0847
Protein of unknown function DUF835; KEGG: afu:AF0633 isoleucyl-tRNA synthetase.
  
 
 0.616
Aboo_1178
KEGG: mfe:Mefer_0911 valyl-tRNA synthetase; TIGRFAM: valyl-tRNA synthetase.
  
  
 0.608
Aboo_1420
PFAM: aminotransferase class V; KEGG: cbb:CLD_3437 aminotransferase, class V.
 
  
 0.588
Aboo_0734
KEGG: mtp:Mthe_0271 glycyl-tRNA synthetase; TIGRFAM: glycyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein.
  
 
 0.585
thrS
KEGG: tga:TGAM_1008 threonyl-tRNA synthetase (ThrS); TIGRFAM: threonyl-tRNA synthetase; PFAM: Threonyl-tRNA synthetase editing domain protein; tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
 
 0.584
hisS
TIGRFAM: histidyl-tRNA synthetase; KEGG: rci:LRC67 histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
 
 0.582
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
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