Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Aboo_1157 | Aboo_1158 | KEGG: mtp:Mthe_1233 helix-turn-helix, type 11 domain-containing protein. | SMART: cation transporting ATPase domain protein; TIGRFAM: plasma-membrane proton-efflux P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; KEGG: mja:MJ1226 plasma membrane ATPase 1 (aha1); PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase. | 0.606 |
Aboo_1157 | Aboo_1159 | KEGG: mtp:Mthe_1233 helix-turn-helix, type 11 domain-containing protein. | KEGG: sai:Saci_0010 hypothetical protein. | 0.440 |
Aboo_1158 | Aboo_1157 | SMART: cation transporting ATPase domain protein; TIGRFAM: plasma-membrane proton-efflux P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; KEGG: mja:MJ1226 plasma membrane ATPase 1 (aha1); PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase. | KEGG: mtp:Mthe_1233 helix-turn-helix, type 11 domain-containing protein. | 0.606 |
Aboo_1158 | Aboo_1159 | SMART: cation transporting ATPase domain protein; TIGRFAM: plasma-membrane proton-efflux P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; KEGG: mja:MJ1226 plasma membrane ATPase 1 (aha1); PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase. | KEGG: sai:Saci_0010 hypothetical protein. | 0.601 |
Aboo_1159 | Aboo_1157 | KEGG: sai:Saci_0010 hypothetical protein. | KEGG: mtp:Mthe_1233 helix-turn-helix, type 11 domain-containing protein. | 0.440 |
Aboo_1159 | Aboo_1158 | KEGG: sai:Saci_0010 hypothetical protein. | SMART: cation transporting ATPase domain protein; TIGRFAM: plasma-membrane proton-efflux P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; KEGG: mja:MJ1226 plasma membrane ATPase 1 (aha1); PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase. | 0.601 |