Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rps28ePFAM: Ribosomal protein S28e; KEGG: pto:PTO1281 30S ribosomal protein S28e; Belongs to the eukaryotic ribosomal protein eS28 family. (69 aa)    
Predicted Functional Partners:
rps6e
PFAM: Ribosomal protein S6e; KEGG: rci:LRC420 30S ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family.
  
 0.999
rpl7ae
Ribosomal protein L7Ae/L30e/S12e/Gadd45; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.
 
 0.999
rpl24e
Ribosomal protein L24E; Binds to the 23S rRNA.
 
 
 0.999
rps19e
Ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.
 
 0.998
rps15
PFAM: Ribosomal S13S15 domain protein; ribosomal protein S15; KEGG: ton:TON_0517 30S ribosomal protein S15P.
  
 0.998
rps9
KEGG: afu:AF1129 30S ribosomal protein S9P; TIGRFAM: ribosomal protein S9P; PFAM: ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
 0.998
rps5
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy.
   
 0.998
Aboo_1506
PFAM: ribosomal protein S8; KEGG: tvo:TVN0340 30S ribosomal protein S8P.
   
 0.998
Aboo_1507
PFAM: ribosomal protein S14; KEGG: tac:Ta1257 30S ribosomal protein S14P.
  
 0.998
Aboo_1509
KEGG: mth:MTH15 30S ribosomal protein S4e; PFAM: Ribosomal protein S4E, central domain protein; Ribosomal protein S4E domain protein; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein.
   
 0.998
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
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