STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aboo_1243PFAM: cobalt transport protein; KEGG: dae:Dtox_1966 cobalt transport protein. (301 aa)    
Predicted Functional Partners:
Aboo_1242
KEGG: dae:Dtox_1967 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.978
Aboo_1367
ABC transporter related protein; KEGG: mja:MJ1572 cobalt transport ATP-binding protein (CbiO); PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.938
Aboo_1241
KEGG: mta:Moth_1455 hypothetical protein.
 
     0.862
Aboo_1244
KEGG: dae:Dtox_1965 hypothetical protein.
 
     0.851
Aboo_1370
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: mja:MJ1569 cobalt transport protein CbiM.
  
 
 0.794
Aboo_1369
KEGG: mvu:Metvu_1322 hypothetical protein.
  
 
 0.793
Aboo_1525
PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; KEGG: pab:PAB1701 tRNA pseudouridine synthase A.
  
  
 0.598
priS
DNA primase, small subunit; Catalytic subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. The small subunit contains the primase catalytic core and has DNA synthesis activity on its own. Binding to the large subunit stabilizes and modulates the activity, increasing the rate of DNA synthesis while decreasing the length of the DNA fragments, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. [...]
       0.548
rps17e
PFAM: Ribosomal protein S17e; KEGG: tko:TK2292 30S ribosomal protein S17e; Belongs to the eukaryotic ribosomal protein eS17 family.
       0.467
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
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