STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aboo_1286Radical SAM domain protein; KEGG: pab:PAB0059 hypothetical protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB. (532 aa)    
Predicted Functional Partners:
Aboo_1287
Thermosome; KEGG: tac:Ta0980 thermosome, alpha chain; TIGRFAM: thermosome; PFAM: chaperonin Cpn60/TCP-1.
       0.608
Aboo_1285
PFAM: Protein of unknown function DUF1616; KEGG: mbu:Mbur_0715 hypothetical protein.
  
    0.576
Aboo_0772
PFAM: Radical SAM domain protein; KEGG: mac:MA3711 hypothetical protein.
 
     0.562
Aboo_1283
PFAM: protein of unknown function DUF99; KEGG: pfu:PF2042 hypothetical protein; Belongs to the UPF0215 family.
       0.560
Aboo_1284
KEGG: tsi:TSIB_0437 peptidyl-tRNA hydrolase; PFAM: protein of unknown function UPF0099.
       0.560
Aboo_1149
PFAM: NMD3 family protein; KEGG: mvu:Metvu_1100 NMD3 family protein.
  
     0.528
Aboo_1195
KEGG: tga:TGAM_0512 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PapS reductase), containing one PUA domain and 2 4Fe-4S binding domains; PFAM: phosphoadenosine phosphosulfate reductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; PUA domain containing protein; SMART: PUA domain containing protein.
 
     0.497
Aboo_0017
KEGG: mtp:Mthe_1698 hypothetical protein.
  
     0.474
Aboo_0505
PFAM: protein of unknown function DUF107; KEGG: smr:Smar_0563 hypothetical protein.
  
     0.458
Aboo_0955
DNA helicase; KEGG: mka:MK0070 superfamily I DNA/RNA helicase; TIGRFAM: DNA helicase; SMART: DEAD-like helicase.
  
    0.427
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
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