STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aboo_1292KEGG: tac:Ta0058 N-terminal acetyltransferase complex ard1 subunit related protein; TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase. (143 aa)    
Predicted Functional Partners:
hutI
KEGG: gka:GK1368 imidazolonepropionase; TIGRFAM: imidazolonepropionase; PFAM: amidohydrolase; Belongs to the metallo-dependent hydrolases superfamily. HutI family.
       0.773
Aboo_1288
PFAM: Radical SAM domain protein; KEGG: tme:Tmel_0030 radical SAM domain-containing protein.
       0.572
Aboo_1289
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tme:Tmel_0031 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
       0.572
Aboo_1290
PFAM: isochorismatase hydrolase; KEGG: hypothetical protein.
       0.572
rpl23
Ribosomal protein L23; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family.
   
   0.546
Aboo_1514
KEGG: tvo:TVN0331 50S ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29.
    
 
 0.528
rpl18
Ribosomal protein L18P/L5E; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
   
   0.523
rpl3
Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
   
   0.519
rpl32e
PFAM: Ribosomal protein L32e; KEGG: pto:PTO0657 50S ribosomal protein L32e; Belongs to the eukaryotic ribosomal protein eL32 family.
    
   0.510
rpl31e
PFAM: Ribosomal protein L31e; KEGG: tvo:TVN0010 50S ribosomal protein L31e; Belongs to the ribosomal protein L31e family.
  
   0.494
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
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