STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
thrSKEGG: tga:TGAM_1008 threonyl-tRNA synthetase (ThrS); TIGRFAM: threonyl-tRNA synthetase; PFAM: Threonyl-tRNA synthetase editing domain protein; tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; Belongs to the class-II aminoacyl-tRNA synthetase family. (612 aa)    
Predicted Functional Partners:
Aboo_1499
PFAM: ribosomal protein L15; KEGG: msi:Msm_0739 50S ribosomal protein L15P.
   
 
 0.933
infB
Translation initiation factor aIF-2; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2.
 
 0.927
rps15
PFAM: Ribosomal S13S15 domain protein; ribosomal protein S15; KEGG: ton:TON_0517 30S ribosomal protein S15P.
  
 
 0.926
rpl11
Ribosomal protein L11-like protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family.
 
 
 0.909
rpl3
Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.889
Aboo_1516
KEGG: tac:Ta1266 50S ribosomal protein L22P; TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17.
   
 
 0.859
Aboo_1507
PFAM: ribosomal protein S14; KEGG: tac:Ta1257 30S ribosomal protein S14P.
   
 
 0.852
rpl1
Ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release.
  
 
 0.839
Aboo_1398
KEGG: tac:Ta1031 30S ribosomal protein S11P; TIGRFAM: ribosomal protein S11P; PFAM: ribosomal protein S11.
  
 
 0.823
pheT
phenylalanyl-tRNA synthetase, beta subunit; SMART: tRNA synthetase B5; B3/4 domain protein; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: afu:AF1424 phenylalanyl-tRNA synthetase subunit beta; PFAM: tRNA synthetase B5; B3/4 domain protein.
 
 
 0.817
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
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