STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aboo_1318PFAM: type II secretion system protein E; KEGG: pfu:PF0331 putative type II secretion system protein. (547 aa)    
Predicted Functional Partners:
Aboo_1317
PFAM: Type II secretion system F domain; KEGG: mbu:Mbur_1575 flagellar assembly protein J.
 
  
 0.969
Aboo_1319
SMART: AAA ATPase; KEGG: mbu:Mbur_1573 ATPase.
 
  
 0.962
Aboo_1320
PFAM: flagellin; KEGG: mbu:Mbur_1572 putative flagellar protein G.
  
  
 0.884
Aboo_1321
KEGG: mar:MAE_14090 hypothetical protein.
  
  
 0.851
Aboo_1322
PFAM: flagellin; KEGG: mja:MJ0892 flagellin.
  
  
 0.836
Aboo_0008
PFAM: Type II secretion system F domain; KEGG: mbu:Mbur_0449 type II secretion system protein.
 
  
 0.767
Aboo_0007
PFAM: Type II secretion system F domain; KEGG: mhu:Mhun_3169 type II secretion system protein.
 
  
 0.747
Aboo_1316
PFAM: DNA polymerase B region; DNA polymerase B exonuclease; KEGG: tac:Ta0907 DNA polymerase II; SMART: DNA-directed DNA polymerase B.
       0.714
Aboo_1315
PFAM: protein of unknown function DUF296; KEGG: pab:PAB0835 hypothetical protein.
     
 0.602
Aboo_0642
PFAM: flagella protein; KEGG: tga:TGAM_1538 flagella accessory protein D or E (FlaD/E).
  
  
 0.555
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.