STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aboo_1334PFAM: periplasmic copper-binding; KEGG: mbu:Mbur_1643 cell surface protein. (1025 aa)    
Predicted Functional Partners:
Aboo_1335
PFAM: NERD domain protein; KEGG: nth:Nther_0849 NERD domain protein.
       0.527
Aboo_1333
PFAM: protein of unknown function DUF450; Eco57I restriction endonuclease; KEGG: mem:Memar_1159 hypothetical protein.
       0.483
Aboo_1336
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: hypothetical protein.
 
     0.471
Aboo_0228
PFAM: TPR repeat-containing protein; KEGG: pmx:PERMA_0503 tetratricopeptide repeat domain protein.
  
     0.406
Aboo_0525
KEGG: tpe:Tpen_1027 phospholipase D/transphosphatidylase.
  
     0.406
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.