STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aboo_1340PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: drm:Dred_0391 binding-protein-dependent transport systems inner membrane component. (469 aa)    
Predicted Functional Partners:
Aboo_1339
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: pab:PAB0094 dipeptide ABC transporter, dipeptide-binding protein; SMART: AAA ATPase.
  
 0.991
Aboo_1338
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: tte:TTE2526 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; SMART: AAA ATPase.
 
 0.985
Aboo_1341
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tle:Tlet_1506 binding-protein-dependent transport systems inner membrane component.
  
 0.966
Aboo_0410
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: tsi:TSIB_1055 ABC-type dipeptide transport system, ATPase component; SMART: AAA ATPase.
  
 0.965
Aboo_1252
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: rci:LRC380 putative ABC-type peptide transport system, ATPase component 1; SMART: AAA ATPase.
  
 0.962
Aboo_0844
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: tme:Tmel_0561 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase.
  
 0.959
Aboo_0411
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: tsi:TSIB_1056 ABC-type dipeptide transport system, ATPase component; SMART: AAA ATPase.
 
 0.943
Aboo_0845
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: pab:PAB1197 oligopeptide transport ATP-binding protein; SMART: AAA ATPase.
 
 0.940
Aboo_1251
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: pfu:PF1412 dipeptide transport ATP-binding protein; SMART: AAA ATPase.
 
 0.940
Aboo_1342
PFAM: extracellular solute-binding protein family 5; KEGG: drm:Dred_0389 extracellular solute-binding protein.
 
 0.906
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.