STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aboo_1368KEGG: mja:MJ1571 cobalt transport protein (CbiQ); TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein. (268 aa)    
Predicted Functional Partners:
Aboo_1370
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: mja:MJ1569 cobalt transport protein CbiM.
 0.999
Aboo_1367
ABC transporter related protein; KEGG: mja:MJ1572 cobalt transport ATP-binding protein (CbiO); PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.998
Aboo_1369
KEGG: mvu:Metvu_1322 hypothetical protein.
  
 0.990
Aboo_1242
KEGG: dae:Dtox_1967 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 
 0.804
Aboo_1371
Transcriptional regulator NikR, CopG family; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family.
     
 0.643
Aboo_1525
PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; KEGG: pab:PAB1701 tRNA pseudouridine synthase A.
  
  
 0.598
Aboo_0124
PFAM: ABC-3 protein; KEGG: afu:AF1981 ABC transporter, permease protein.
    
 0.461
Aboo_1372
Phosphodiesterase, MJ0936 family; KEGG: mbu:Mbur_0682 metallophosphoesterase; TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase.
       0.406
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.