STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aboo_1496PFAM: protein of unknown function DUF106 transmembrane; KEGG: tvo:TVN0350 hypothetical protein. (223 aa)    
Predicted Functional Partners:
adkA
KEGG: tvo:TVN0349 adenylate kinase; Belongs to the archaeal adenylate kinase family.
  
    0.860
rps5
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy.
  
    0.855
Aboo_1499
PFAM: ribosomal protein L15; KEGG: msi:Msm_0739 50S ribosomal protein L15P.
  
    0.854
secY
Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
  
    0.835
rpl19e
Ribosomal protein L19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family.
  
    0.828
Aboo_1505
KEGG: mth:MTH19 50S ribosomal protein L6P; TIGRFAM: ribosomal protein L6P; PFAM: Ribosomal protein L6, alpha-beta domain.
  
    0.825
rpl30
KEGG: pfu:PF1803 50S ribosomal protein L30P; TIGRFAM: ribosomal protein L30P; PFAM: ribosomal protein L30.
  
    0.821
rpl32e
PFAM: Ribosomal protein L32e; KEGG: pto:PTO0657 50S ribosomal protein L32e; Belongs to the eukaryotic ribosomal protein eL32 family.
  
    0.821
Aboo_1515
TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; KEGG: mja:MJ0461 30S ribosomal protein S3P; SMART: KH domain protein.
  
    0.821
truB
Pseudouridylate synthase TruB domain protein; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily.
       0.814
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
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