STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aboo_1513Ribonuclease P, Rpp29; KEGG: afu:AF1917 hypothetical protein; PFAM: Ribonuclease P, Rpp29; SMART: Ribonuclease P, Rpp29. (93 aa)    
Predicted Functional Partners:
rnp4
RNAse P, Rpr2/Rpp21 subunit; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.
  
 
 
 0.999
Aboo_1512
KEGG: mka:MK1217 30S ribosomal protein S17P; TIGRFAM: ribosomal protein S17P; PFAM: ribosomal protein S17.
  
    0.925
Aboo_1514
KEGG: tvo:TVN0331 50S ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29.
  
    0.925
rpl3
Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
  
    0.923
Aboo_1515
TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; KEGG: mja:MJ0461 30S ribosomal protein S3P; SMART: KH domain protein.
  
    0.914
rpl4
50S ribosomal protein L4P; Forms part of the polypeptide exit tunnel.
 
    0.865
Aboo_1509
KEGG: mth:MTH15 30S ribosomal protein S4e; PFAM: Ribosomal protein S4E, central domain protein; Ribosomal protein S4E domain protein; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein.
 
    0.861
Aboo_1516
KEGG: tac:Ta1266 50S ribosomal protein L22P; TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17.
  
    0.855
rpl32e
PFAM: Ribosomal protein L32e; KEGG: pto:PTO0657 50S ribosomal protein L32e; Belongs to the eukaryotic ribosomal protein eL32 family.
 
    0.852
Aboo_1511
KEGG: tvo:TVN0335 50S ribosomal protein L14P; TIGRFAM: 50S ribosomal protein L14P; PFAM: ribosomal protein L14b/L23e.
  
    0.849
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.