STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aboo_1525PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; KEGG: pab:PAB1701 tRNA pseudouridine synthase A. (253 aa)    
Predicted Functional Partners:
rpoD
RNA polymerase insert; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoD/eukaryotic RPB3 RNA polymerase subunit family.
  
  
 0.960
truB
Pseudouridylate synthase TruB domain protein; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily.
 
 
 0.780
Aboo_1526
Putative transcriptional regulator; KEGG: ton:TON_1663 transcription regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR.
     
 0.779
Aboo_1367
ABC transporter related protein; KEGG: mja:MJ1572 cobalt transport ATP-binding protein (CbiO); PFAM: ABC transporter related; SMART: AAA ATPase.
  
  
 0.683
rpl30
KEGG: pfu:PF1803 50S ribosomal protein L30P; TIGRFAM: ribosomal protein L30P; PFAM: ribosomal protein L30.
 
 
 0.673
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily.
 
  
 0.664
truD
tRNA pseudouridine synthase D TruD; Could be responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family.
 
 
 0.657
Aboo_1512
KEGG: mka:MK1217 30S ribosomal protein S17P; TIGRFAM: ribosomal protein S17P; PFAM: ribosomal protein S17.
  
 
 0.653
Aboo_1091
DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
  
 0.622
Aboo_0093
Small GTP-binding protein; KEGG: tsi:TSIB_1365 predicted GTPase, containing NOG1 domain; TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related.
  
    0.617
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
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