STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ60759.1Proline dipeptidase; [E] COG0006 Xaa-Pro aminopeptidase. (411 aa)    
Predicted Functional Partners:
EDZ61099.1
Conserved hypothetical protein.
 
     0.922
EDZ60149.1
Dimethylglycine dehydrogenase; [E] COG0404 Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
 
 
 0.902
EDZ60456.1
Rieske 2Fe-2S family protein; [S] COG2718 Uncharacterized conserved protein.
 
     0.798
cysC
[P] COG0529 Adenylylsulfate kinase and related kinases.
       0.773
EDZ60103.1
Cytidylyltransferase.
       0.762
EDZ60973.1
Homocysteine S-methyltransferase; [E] COG0646 Methionine synthase I (cobalamin-dependent), methyltransferase domain.
       0.723
EDZ59914.1
Hypothetical protein.
       0.723
soxA_2
Sarcosine oxidase alpha subunit; [R] COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; Belongs to the GcvT family.
  
 
 0.661
soxA_1
Sarcosine oxidase, alpha subunit; [R] COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; Belongs to the GcvT family.
  
 
 0.661
EDZ60034.1
Inosine-5-monophosphate dehydrogenase; Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides.
    
   0.648
Your Current Organism:
Pelagibacter sp. HTCC7211
NCBI taxonomy Id: 439493
Other names: C. Pelagibacter sp. HTCC7211, Candidatus Pelagibacter sp. HTCC7211
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.