STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ59795.1[E] COG3340 Peptidase E; Belongs to the peptidase S51 family. (229 aa)    
Predicted Functional Partners:
EDZ60934.1
[C] COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases.
       0.773
EDZ59816.1
Benzaldehyde lyase, putative; [R] COG3960 Glyoxylate carboligase; Belongs to the TPP enzyme family.
       0.773
EDZ60289.1
Conserved hypothetical protein; [R] COG2351 Transthyretin-like protein.
       0.773
EDZ61098.1
Probable aminomethyltransferase, putative; [E] COG0404 Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
       0.701
fadA
3-ketoacyl-CoA thiolase (Acetyl-CoA acyltransferase); [I] COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
       0.648
ilvE_2
Branched-chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
       0.631
EDZ59984.1
Putative extracellular solute-binding protein, family 3; [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
     0.611
Your Current Organism:
Pelagibacter sp. HTCC7211
NCBI taxonomy Id: 439493
Other names: C. Pelagibacter sp. HTCC7211, Candidatus Pelagibacter sp. HTCC7211
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