STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ60043.1PQQ enzyme repeat family protein; [S] COG1520 FOG: WD40-like repeat. (432 aa)    
Predicted Functional Partners:
comL
DNA uptake lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
 
 0.999
yaeT
[M] COG4775 Outer membrane protein/protective antigen OMA87.
 
 
 0.999
EDZ60311.1
PPIC-type PPIASE domain protein; [O] COG0760 Parvulin-like peptidyl-prolyl isomerase.
  
 
 0.916
EDZ60332.1
Conserved hypothetical protein.
    
 
 0.820
EDZ60581.1
Conserved hypothetical protein.
       0.790
acnA
Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
     
 0.775
EDZ60929.1
Conserved hypothetical protein; [O] COG0760 Parvulin-like peptidyl-prolyl isomerase.
  
 
 0.774
csaA
methionine--tRNA ligase protein; [R] COG0073 EMAP domain.
       0.773
yfiK
Transporter; [E] COG1280 Putative threonine efflux protein.
       0.773
PB7211_46
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
    0.623
Your Current Organism:
Pelagibacter sp. HTCC7211
NCBI taxonomy Id: 439493
Other names: C. Pelagibacter sp. HTCC7211, Candidatus Pelagibacter sp. HTCC7211
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.