STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crtYLycopene cyclase. (354 aa)    
Predicted Functional Partners:
ctrI
[Q] COG1233 Phytoene dehydrogenase and related proteins.
 
 
 0.983
crtB
[I] COG1562 Phytoene/squalene synthetase.
 
 
 0.975
EDZ59814.1
Putative transmembrane protein; Catalyzes the cleavage of beta-carotene at its central double bond (15,15') to yield two molecules of all-trans-retinal. Belongs to the Brp/Blh beta-carotene diooxygenase family.
 
     0.944
EDZ60346.1
[R] COG5524 Bacteriorhodopsin.
 
   
 0.904
etfB
[C] COG2086 Electron transfer flavoprotein, beta subunit.
  
 
 0.814
EDZ59964.1
Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.
  
 
 0.800
etfA
[C] COG2025 Electron transfer flavoprotein, alpha subunit.
  
 
 0.749
atpF-2
H+-transporting two-sector ATPase (subunit b); Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
       0.648
atpF
H+-transporting two-sector ATPase (subunit b); Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
       0.648
EDZ60413.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.641
Your Current Organism:
Pelagibacter sp. HTCC7211
NCBI taxonomy Id: 439493
Other names: C. Pelagibacter sp. HTCC7211, Candidatus Pelagibacter sp. HTCC7211
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