Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ntrCTranscriptional regulator, NtrC family; [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains. (451 aa)    
Predicted Functional Partners:
ntrY
Nitrogen regulation protein NtrY; [T] COG0642 Signal transduction histidine kinase.
 
 0.991
EDZ60095.1
Tetratricopeptide repeat domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
 0.908
rsbU
Sigma factor SigB regulation protein; [TK] COG2208 Serine phosphatase RsbU, regulator of sigma subunit.
 
 
 0.906
EDZ60156.1
Putative adenylate/guanylate cyclase transmembrane protein; [T] COG4252 Predicted transmembrane sensor domain.
   
 0.858
trkA
Potassium uptake protein trka; [P] COG1226 Kef-type K+ transport systems, predicted NAD-binding component.
       0.813
EDZ60610.1
Tetratricopeptide repeat family protein; [R] COG0457 FOG: TPR repeat.
 
  
 0.804
EDZ60338.1
Conserved hypothetical protein; [P] COG0168 Trk-type K+ transport systems, membrane components.
       0.782
ribA
GTP cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.
    
 0.770
EDZ59882.1
Ammonium transporter family protein; [TK] COG2208 Serine phosphatase RsbU, regulator of sigma subunit.
  
 0.752
fadB
3-hydroxyacyl-CoA dehydrogenase; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
  
 0.678
Your Current Organism:
Pelagibacter sp. HTCC7211
NCBI taxonomy Id: 439493
Other names: C. Pelagibacter sp. HTCC7211, Candidatus Pelagibacter sp. HTCC7211
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