STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ60431.1ABC transporter, QAT family, substrate-binding protein, putative; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components. (320 aa)    
Predicted Functional Partners:
opuAA_1
Glycine betaine transporter, ATP-binding protein; [P] COG1135 ABC-type metal ion transport system, ATPase component.
 
 0.977
proW
[E] COG1174 ABC-type proline/glycine betaine transport systems, permease component.
 
 
 0.966
opuAA_2
Glycine betaine transporter, ATP-binding protein; [E] COG3842 ABC-type spermidine/putrescine transport systems, ATPase components.
 
 0.936
EDZ59779.1
Glycine betaine transport ATP-binding protein opuAA; [C] COG0578 Glycerol-3-phosphate dehydrogenase.
 
 0.918
EDZ60345.1
Glycine betaine transport ATP-binding protein opuAA; [E] COG3842 ABC-type spermidine/putrescine transport systems, ATPase components.
 
 0.918
opuAB
[P] COG2011 ABC-type metal ion transport system, permease component.
 
 
 0.900
EDZ59888.1
Glycine betaine ABC transport system integral membrane protein; [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
 
 0.849
opuAC
[E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.
  
  
  0.844
EDZ59871.1
Glycine betaine-binding lipoprotein, putative; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.
  
  
  0.785
PB7211_88
ABC transporter, membrane spanning protein (glycine betaine); [P] COG0573 ABC-type phosphate transport system, permease component.
 
 
 0.779
Your Current Organism:
Pelagibacter sp. HTCC7211
NCBI taxonomy Id: 439493
Other names: C. Pelagibacter sp. HTCC7211, Candidatus Pelagibacter sp. HTCC7211
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