STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_1Extracellular solute-binding protein, family 1; [G] COG1653 ABC-type sugar transport system, periplasmic component. (414 aa)    
Predicted Functional Partners:
RBY4I_34
Binding-protein-dependent transport systems inner membrane component; [G] COG0395 ABC-type sugar transport system, permease component; overlaps another CDS with the same product name.
 
 0.999
RBY4I_11
[G] COG1175 ABC-type sugar transport systems, permease components; overlaps another CDS with the same product name.
 
 0.995
RBY4I_60
[G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.
 
 0.994
EDZ46108.1
Sugar ABC transporter, ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.
  
 0.961
EDZ48024.1
Sugar ABC transporter, ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.
  
 0.961
upgC
SN-glycerol-3-phosphate ABC transporter, ATP-binding protein; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.
  
 0.961
RBY4I_305
[G] COG1175 ABC-type sugar transport systems, permease components.
  
 0.952
ugpA
SN-glycerol-3-phosphate ABC transporter, permease protein; [G] COG1175 ABC-type sugar transport systems, permease components.
  
 0.952
EDZ46932.1
[R] COG0795 Predicted permeases; overlaps another CDS with the same product name.
     
  0.916
EDZ48645.1
[R] COG0795 Predicted permeases; overlaps another CDS with the same product name.
     
  0.916
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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