RBY4I_101 protein (Rhodobacterales bacterium Y4I)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RBY4I_101

Twin-arginine translocation pathway signal; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (849 aa)

Predicted Functional Partners:

RBY4I_83

0.986

EDZ45955.1

0.540

RBY4I_118

0.534

EDZ48349.1

0.526

EDZ47314.1

0.516

EDZ48133.1

0.500

EDZ47093.1

0.482

RBY4I_675

0.482

EDZ47479.1

0.467

EDZ48614.1

0.451

Your Current Organism:

Rhodobacterales bacterium Y4I

NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EDZ45955.1	EDZ48349.1	RBY4I_1166	RBY4I_3570	Conserved hypothetical protein.	Glycosyl transferase, family 2; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.	0.499
EDZ45955.1	RBY4I_101	RBY4I_1166	RBY4I_101	Conserved hypothetical protein.	Twin-arginine translocation pathway signal; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	0.540
EDZ45955.1	RBY4I_83	RBY4I_1166	RBY4I_83	Conserved hypothetical protein.	Glycosyl transferase, group 2 family protein; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.	0.689
EDZ47093.1	EDZ48133.1	RBY4I_2311	RBY4I_3353	Glycosyl transferase, group 1 family protein; [M] COG0438 Glycosyltransferase.	Conserved hypothetical protein.	0.771
EDZ47093.1	EDZ48349.1	RBY4I_2311	RBY4I_3570	Glycosyl transferase, group 1 family protein; [M] COG0438 Glycosyltransferase.	Glycosyl transferase, family 2; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.	0.838
EDZ47093.1	EDZ48614.1	RBY4I_2311	RBY4I_3837	Glycosyl transferase, group 1 family protein; [M] COG0438 Glycosyltransferase.	Nucleotidyltransferase family protein; [M] COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains).	0.409
EDZ47093.1	RBY4I_101	RBY4I_2311	RBY4I_101	Glycosyl transferase, group 1 family protein; [M] COG0438 Glycosyltransferase.	Twin-arginine translocation pathway signal; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	0.482
EDZ47093.1	RBY4I_83	RBY4I_2311	RBY4I_83	Glycosyl transferase, group 1 family protein; [M] COG0438 Glycosyltransferase.	Glycosyl transferase, group 2 family protein; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.	0.611
EDZ47314.1	RBY4I_101	RBY4I_2532	RBY4I_101	beta-N-acetylhexosaminidase; [G] COG1472 Beta-glucosidase-related glycosidases.	Twin-arginine translocation pathway signal; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	0.516
EDZ47314.1	RBY4I_83	RBY4I_2532	RBY4I_83	beta-N-acetylhexosaminidase; [G] COG1472 Beta-glucosidase-related glycosidases.	Glycosyl transferase, group 2 family protein; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.	0.863
EDZ47479.1	EDZ48133.1	RBY4I_2697	RBY4I_3353	Conserved hypothetical protein.	Conserved hypothetical protein.	0.504
EDZ47479.1	RBY4I_101	RBY4I_2697	RBY4I_101	Conserved hypothetical protein.	Twin-arginine translocation pathway signal; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	0.467
EDZ48133.1	EDZ47093.1	RBY4I_3353	RBY4I_2311	Conserved hypothetical protein.	Glycosyl transferase, group 1 family protein; [M] COG0438 Glycosyltransferase.	0.771
EDZ48133.1	EDZ47479.1	RBY4I_3353	RBY4I_2697	Conserved hypothetical protein.	Conserved hypothetical protein.	0.504
EDZ48133.1	EDZ48349.1	RBY4I_3353	RBY4I_3570	Conserved hypothetical protein.	Glycosyl transferase, family 2; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.	0.772
EDZ48133.1	RBY4I_101	RBY4I_3353	RBY4I_101	Conserved hypothetical protein.	Twin-arginine translocation pathway signal; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	0.500
EDZ48133.1	RBY4I_83	RBY4I_3353	RBY4I_83	Conserved hypothetical protein.	Glycosyl transferase, group 2 family protein; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.	0.614
EDZ48349.1	EDZ45955.1	RBY4I_3570	RBY4I_1166	Glycosyl transferase, family 2; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.	Conserved hypothetical protein.	0.499
EDZ48349.1	EDZ47093.1	RBY4I_3570	RBY4I_2311	Glycosyl transferase, family 2; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.	Glycosyl transferase, group 1 family protein; [M] COG0438 Glycosyltransferase.	0.838
EDZ48349.1	EDZ48133.1	RBY4I_3570	RBY4I_3353	Glycosyl transferase, family 2; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.	Conserved hypothetical protein.	0.772