STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDZ45817.1Response regulator receiver protein, putative; [K] COG2771 DNA-binding HTH domain-containing proteins. (211 aa)    
Predicted Functional Partners:
EDZ48244.1
Conserved hypothetical protein; [TQ] COG3916 N-acyl-L-homoserine lactone synthetase; Belongs to the autoinducer synthase family.
 
 
 0.945
EDZ48409.1
Autoinducer synthesis protein; [TQ] COG3916 N-acyl-L-homoserine lactone synthetase.
 
 
 0.678
RBY4I_443
Metallo-beta-lactamase family protein; [R] COG0491 Zn-dependent hydrolases, including glyoxylases.
    
   0.674
RBY4I_762
Conserved hypothetical protein.
  
     0.506
EDZ48197.1
Conserved hypothetical protein.
  
     0.472
RBY4I_557
[T] COG0642 Signal transduction histidine kinase.
 
  0.451
EDZ48116.1
Helix-turn-helix domain protein.
       0.445
EDZ46933.1
[M] COG1596 Periplasmic protein involved in polysaccharide export.
  
    0.430
EDZ48662.1
KR domain family; [IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase.
   
  
 0.418
EDZ46335.1
Cell division protease FtsH, putative; [O] COG0465 ATP-dependent Zn proteases; Belongs to the AAA ATPase family.
  
     0.416
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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