STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ45848.1Putative site-specific recombinase, phage integrase family protein; Belongs to the 'phage' integrase family. (338 aa)    
Predicted Functional Partners:
EDZ46336.1
Hypothetical protein; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
  
  0.760
RBY4I_25
PimS2 protein; [C] COG0644 Dehydrogenases (flavoproteins).
  
     0.703
EDZ47802.1
Peptidase C14, caspase catalytic subunit p20; [R] COG0790 FOG: TPR repeat, SEL1 subfamily.
  
     0.695
EDZ46335.1
Cell division protease FtsH, putative; [O] COG0465 ATP-dependent Zn proteases; Belongs to the AAA ATPase family.
  
     0.692
EDZ46872.1
ATP-dependent Zn protease, putative; [O] COG0464 ATPases of the AAA+ class.
  
     0.671
EDZ47550.1
Conserved hypothetical protein.
  
     0.615
EDZ48488.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
    0.610
EDZ47847.1
PRC-barrel domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.566
RBY4I_5
[V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
  
     0.562
EDZ46066.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
 
   0.552
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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