STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_108Beta-lactamase domain protein; [J] COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing. (460 aa)    
Predicted Functional Partners:
gpmI
2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
   
 0.928
EDZ47192.1
Conserved hypothetical protein.
    
 0.921
EDZ46597.1
[L] COG1793 ATP-dependent DNA ligase.
   
 0.816
EDZ47339.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
    
 0.800
cyaF_1
[T] COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain).
   
  0.787
RBY4I_444
Adenylate cyclase Cya3; [R] COG0457 FOG: TPR repeat.
   
  0.787
RBY4I_99
Calcium-transporting ATPase 1 (Golgi Ca(2+)-ATPase); [P] COG2217 Cation transport ATPase.
 
 0.787
RBY4I_111
UspA domain protein; [T] COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
  
    0.716
lepB
[U] COG0681 Signal peptidase I; Belongs to the peptidase S26 family.
   
 
  0.716
polA
DNA polymerase I superfamily; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.688
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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