STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_111UspA domain protein; [T] COG0589 Universal stress protein UspA and related nucleotide-binding proteins. (276 aa)    
Predicted Functional Partners:
RBY4I_108
Beta-lactamase domain protein; [J] COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing.
  
    0.722
RBY4I_102
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
       0.678
RBY4I_126
Twin-arginine translocation pathway signal; [R] COG2041 Sulfite oxidase and related enzymes.
       0.678
RBY4I_87
Twin-arginine translocation pathway signal; [G] COG1879 ABC-type sugar transport system, periplasmic component.
       0.512
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.