STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_112Conserved hypothetical protein. (149 aa)    
Predicted Functional Partners:
EDZ46004.1
Conserved hypothetical protein.
  
 0.780
EDZ48397.1
FtsK/SpoIIIE family, putative; [D] COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins.
    
 
 0.673
RBY4I_276
Rb139; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
 0.657
EDZ46507.1
Polysaccharide biosynthesis/export protein; [M] COG0797 Lipoproteins.
     
  0.558
EDZ46933.1
[M] COG1596 Periplasmic protein involved in polysaccharide export.
     
  0.558
EDZ46102.1
Outer membrane porin.
   
 
  0.554
EDZ47767.1
Conserved hypothetical protein.
   
 
  0.554
EDZ47951.1
Conserved hypothetical protein.
   
 
  0.554
EDZ46255.1
OmpA/MotB; [P] COG0226 ABC-type phosphate transport system, periplasmic component.
   
 0.551
EDZ48426.1
Membrane protein involved in colicin uptake; [S] COG2268 Uncharacterized protein conserved in bacteria.
  
 
 0.545
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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