STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RBY4I_115[R] COG1064 Zn-dependent alcohol dehydrogenases. (326 aa)    
Predicted Functional Partners:
EDZ46080.1
[C] COG1454 Alcohol dehydrogenase, class IV.
  
 0.948
EDZ47332.1
Oxidoreductase, zinc-binding dehydrogenase family; [R] COG1064 Zn-dependent alcohol dehydrogenases.
  
 
0.856
EDZ46434.1
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; [ER] COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
  
 
0.847
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
    
 0.784
exaA
Quinoprotein alcohol dehydrogenase; [S] COG1520 FOG: WD40-like repeat.
   
 
 0.783
EDZ45002.1
Oxidoreductase, FAD-binding; [C] COG0633 Ferredoxin.
  
 
 0.751
EDZ47253.1
Fatty acid desaturase family protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
     
  0.742
EDZ46647.1
Ferredoxin; [C] COG0633 Ferredoxin.
  
 
 0.741
paaK
Phenylacetic acid degradation oxidoreductase PaaK; [HC] COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases.
  
 
 0.741
EDZ48635.1
Reductive dehalogenase subfamily, putative; [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
 
 0.741
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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