STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ45996.1TadE-like protein; [U] COG4961 Flp pilus assembly protein TadG. (178 aa)    
Predicted Functional Partners:
EDZ48310.1
Conserved hypothetical protein; [U] COG4961 Flp pilus assembly protein TadG.
 
    0.964
EDZ48129.1
Conserved hypothetical protein.
 
    0.963
cpaB
[U] COG3745 Flp pilus assembly protein CpaB.
 
  
 0.943
RBY4I_855
Response regulator receiver protein; [D] COG0489 ATPases involved in chromosome partitioning.
 
  
 0.923
RBY4I_609
Type II secretion system protein; [NU] COG2064 Flp pilus assembly protein TadC.
 
  
 0.887
RBY4I_738
Conserved hypothetical protein.
 
  
 0.805
EDZ46625.1
Conserved hypothetical protein.
 
  
 0.803
EDZ47831.1
Bacterial type II/III secretion system protein; [NU] COG1450 Type II secretory pathway, component PulD; Belongs to the bacterial secretin family.
 
  
 0.765
EDZ47756.1
Peptidase A24A, prepilin type IV; [OU] COG4960 Flp pilus assembly protein, protease CpaA.
 
  
 0.753
EDZ48769.1
Lipoprotein, putative; [S] COG3147 Uncharacterized protein conserved in bacteria.
 
     0.723
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.