STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_122Hemolysin-type calcium-binding region; [Q] COG2931 RTX toxins and related Ca2+-binding proteins. (303 aa)    
Predicted Functional Partners:
EDZ46940.1
Type I secretion target repeat protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  0.837
EDZ48294.1
Type I secretion membrane fusion protein, HlyD; [M] COG0845 Membrane-fusion protein.
 
    0.728
EDZ48710.1
[V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
 
 0.700
RBY4I_639
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
 
  0.680
EDZ48065.1
Type I secretion membrane fusion protein, HlyD; [M] COG0845 Membrane-fusion protein.
 
    0.671
RBY4I_276
Rb139; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
 
 
0.609
EDZ48666.1
Rb139; [Q] COG2931 RTX toxins and related Ca2+-binding proteins.
  
 
0.579
EDZ47160.1
Hemolysin-type calcium-binding region; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
 
0.571
EDZ47930.1
Protein secretion ABC efflux system, permease and ATP-binding protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
  
 0.539
EDZ48662.1
KR domain family; [IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase.
     
 0.518
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.