STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
repA_3RepA partitioning protein/ATPase, ParA type; [D] COG1192 ATPases involved in chromosome partitioning. (395 aa)    
Predicted Functional Partners:
RBY4I_135
ParB-like nuclease domain family; [K] COG1475 Predicted transcriptional regulators; Belongs to the ParB family.
 
 
 0.974
repBf
Plasmid partitioning protein RepBf1; [K] COG1475 Predicted transcriptional regulators; Belongs to the ParB family.
 
 
 0.890
RBY4I_127
Replication protein C; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
   
 0.875
repC
RepC2 replication protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
   
 0.786
RBY4I_2
Rb102.
 
 
 0.782
RBY4I_153
Replication protein, putative; [K] COG1475 Predicted transcriptional regulators.
 
   0.774
parB
Chromosome partitioning protein ParB; [K] COG1475 Predicted transcriptional regulators; Belongs to the ParB family.
 
 
 0.635
RBY4I_83
Glycosyl transferase, group 2 family protein; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
 
 0.591
RBY4I_318
Glycosyl transferase, group 2 family protein; [M] COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
  
 
 0.553
EDZ48349.1
Glycosyl transferase, family 2; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
 
 0.553
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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