STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_126Twin-arginine translocation pathway signal; [R] COG2041 Sulfite oxidase and related enzymes. (281 aa)    
Predicted Functional Partners:
RBY4I_87
Twin-arginine translocation pathway signal; [G] COG1879 ABC-type sugar transport system, periplasmic component.
     0.989
RBY4I_102
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
  0.978
soxD_2
[C] COG3474 Cytochrome c2.
 
 0.933
RBY4I_539
Cytochrome c, class I; [C] COG3258 Cytochrome c.
 
 
 0.889
soxX
Monoheme Cytochrome c SoxX.
   
 0.783
cysC
ATP-sulfurylase family; Catalyzes the synthesis of activated sulfate.
     
 0.754
soxA
Diheme Cytochrome c SoxA; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
   
 0.741
RBY4I_111
UspA domain protein; [T] COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
       0.678
EDZ46138.1
Cytochrome c, class I; [C] COG3474 Cytochrome c2.
  
  0.662
msrQ
Ferric reductase domain protein transmembrane component, N-terminal domain; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduct [...]
  
  
 0.648
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.