STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_129Uma3; [R] COG0645 Predicted kinase. (508 aa)    
Predicted Functional Partners:
EDZ46563.1
HAD-superfamily hydrolase, subfamily IA, variant 1; [R] COG0637 Predicted phosphatase/phosphohexomutase.
  
    0.748
EDZ47056.1
[R] COG1926 Predicted phosphoribosyltransferases.
 
  
 0.743
RBY4I_99
Calcium-transporting ATPase 1 (Golgi Ca(2+)-ATPase); [P] COG2217 Cation transport ATPase.
 
    0.654
EDZ46656.1
[Q] COG0412 Dienelactone hydrolase and related enzymes.
  
  
 0.636
RBY4I_139
UspA; [T] COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
  
    0.617
EDZ47119.1
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, putative; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
  
    0.572
EDZ48609.1
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
  
    0.572
RBY4I_813
Conserved hypothetical protein.
  
    0.572
EDZ46996.1
[S] COG2898 Uncharacterized conserved protein.
     
 0.562
RBY4I_115
[R] COG1064 Zn-dependent alcohol dehydrogenases.
 
     0.528
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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