STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_13Transcriptional regulator, LysR family; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (310 aa)    
Predicted Functional Partners:
RBY4I_50
DctQ; [Q] COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
     0.884
RBY4I_3
DctP; [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
     0.858
RBY4I_40
Opine oxidase subunit B; [E] COG0665 Glycine/D-amino acid oxidases (deaminating).
 
     0.833
RBY4I_37
Opine oxidase subunit A; [O] COG0492 Thioredoxin reductase.
 
     0.776
RBY4I_30
DctM; [R] COG4666 TRAP-type uncharacterized transport system, fused permease components.
 
     0.756
RBY4I_4
Proline dehydrogenase, alpha subunit; [R] COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
 
     0.741
EDZ48475.1
Transcriptional Regulator, LysR family; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.681
EDZ47356.1
Transcriptional regulator, LysR family; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.624
EDZ47106.1
Transcriptional regulator, LysR family; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.592
EDZ48732.1
Transcriptional regulator, LysR family; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.592
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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