RBY4I_134 protein (Rhodobacterales bacterium Y4I)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RBY4I_134

Chlorocatechol 1,2-dioxygenase; [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit. (289 aa)

Predicted Functional Partners:

EDZ46080.1

0.980

RBY4I_97

0.971

menC

0.836

EDZ46698.1

0.812

pcaH

0.769

hpaD

0.760

EDZ45901.1

0.754

RBY4I_117

0.734

RBY4I_110

0.716

RBY4I_82

0.714

Your Current Organism:

Rhodobacterales bacterium Y4I

NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EDZ45901.1	RBY4I_134	RBY4I_1112	RBY4I_134	Glyoxalase/bleomycin resistance protein/dioxygenase; [E] COG0346 Lactoylglutathione lyase and related lyases.	Chlorocatechol 1,2-dioxygenase; [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit.	0.754
EDZ45901.1	hpaD	RBY4I_1112	RBY4I_3227	Glyoxalase/bleomycin resistance protein/dioxygenase; [E] COG0346 Lactoylglutathione lyase and related lyases.	3,4-dihydroxyphenylacetate 2,3-dioxygenase; [E] COG0346 Lactoylglutathione lyase and related lyases.	0.504
EDZ46080.1	RBY4I_134	RBY4I_1292	RBY4I_134	[C] COG1454 Alcohol dehydrogenase, class IV.	Chlorocatechol 1,2-dioxygenase; [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit.	0.980
EDZ46080.1	pcaH	RBY4I_1292	RBY4I_3323	[C] COG1454 Alcohol dehydrogenase, class IV.	[Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit.	0.440
EDZ46698.1	RBY4I_134	RBY4I_1915	RBY4I_134	Mandelate racemase/muconate lactonizing enzyme family protein; [MR] COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily.	Chlorocatechol 1,2-dioxygenase; [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit.	0.812
EDZ46698.1	pcaH	RBY4I_1915	RBY4I_3323	Mandelate racemase/muconate lactonizing enzyme family protein; [MR] COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily.	[Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit.	0.431
RBY4I_110	RBY4I_134	RBY4I_110	RBY4I_134	Phenol hydroxylase component B; [R] COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.	Chlorocatechol 1,2-dioxygenase; [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit.	0.716
RBY4I_110	RBY4I_82	RBY4I_110	RBY4I_82	Phenol hydroxylase component B; [R] COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.	Riboflavin kinase; [H] COG0196 FAD synthase.	0.941
RBY4I_110	RBY4I_97	RBY4I_110	RBY4I_97	Phenol hydroxylase component B; [R] COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.	Muconate cycloisomerase 1; [MR] COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; Belongs to the mandelate racemase/muconate lactonizing enzyme family.	0.500
RBY4I_117	RBY4I_134	RBY4I_117	RBY4I_134	Putative carboxylesterase protein; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).	Chlorocatechol 1,2-dioxygenase; [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit.	0.734
RBY4I_117	RBY4I_97	RBY4I_117	RBY4I_97	Putative carboxylesterase protein; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).	Muconate cycloisomerase 1; [MR] COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; Belongs to the mandelate racemase/muconate lactonizing enzyme family.	0.519
RBY4I_134	EDZ45901.1	RBY4I_134	RBY4I_1112	Chlorocatechol 1,2-dioxygenase; [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit.	Glyoxalase/bleomycin resistance protein/dioxygenase; [E] COG0346 Lactoylglutathione lyase and related lyases.	0.754
RBY4I_134	EDZ46080.1	RBY4I_134	RBY4I_1292	Chlorocatechol 1,2-dioxygenase; [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit.	[C] COG1454 Alcohol dehydrogenase, class IV.	0.980
RBY4I_134	EDZ46698.1	RBY4I_134	RBY4I_1915	Chlorocatechol 1,2-dioxygenase; [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit.	Mandelate racemase/muconate lactonizing enzyme family protein; [MR] COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily.	0.812
RBY4I_134	RBY4I_110	RBY4I_134	RBY4I_110	Chlorocatechol 1,2-dioxygenase; [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit.	Phenol hydroxylase component B; [R] COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.	0.716
RBY4I_134	RBY4I_117	RBY4I_134	RBY4I_117	Chlorocatechol 1,2-dioxygenase; [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit.	Putative carboxylesterase protein; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).	0.734
RBY4I_134	RBY4I_82	RBY4I_134	RBY4I_82	Chlorocatechol 1,2-dioxygenase; [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit.	Riboflavin kinase; [H] COG0196 FAD synthase.	0.714
RBY4I_134	RBY4I_97	RBY4I_134	RBY4I_97	Chlorocatechol 1,2-dioxygenase; [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit.	Muconate cycloisomerase 1; [MR] COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; Belongs to the mandelate racemase/muconate lactonizing enzyme family.	0.971
RBY4I_134	hpaD	RBY4I_134	RBY4I_3227	Chlorocatechol 1,2-dioxygenase; [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit.	3,4-dihydroxyphenylacetate 2,3-dioxygenase; [E] COG0346 Lactoylglutathione lyase and related lyases.	0.760
RBY4I_134	menC	RBY4I_134	RBY4I_3443	Chlorocatechol 1,2-dioxygenase; [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit.	O-succinylbenzoic acid synthetase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).	0.836