STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ46162.1Peptidase M48, Ste24p; [R] COG4783 Putative Zn-dependent protease, contains TPR repeats. (451 aa)    
Predicted Functional Partners:
RBY4I_535
Dsba oxidoreductase; [O] COG1651 Protein-disulfide isomerase.
  
    0.816
ribB
Riboflavin biosynthesis protein ribAB; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
   
  0.765
EDZ48668.1
Aminotransferase, class I and II; [E] COG0436 Aspartate/tyrosine/aromatic aminotransferase.
       0.691
RBY4I_604
Peptidase M23B; [D] COG4942 Membrane-bound metallopeptidase.
   
   0.573
mcpE
[NT] COG0840 Methyl-accepting chemotaxis protein.
    
 0.567
EDZ47337.1
N-acetylmuramoyl-L-alanine amidase, family 3; [M] COG0860 N-acetylmuramoyl-L-alanine amidase.
       0.526
EDZ46661.1
[NT] COG0840 Methyl-accepting chemotaxis protein.
    
  0.514
EDZ48247.1
[NT] COG0840 Methyl-accepting chemotaxis protein.
    
  0.514
EDZ46337.1
HWE histidine kinase family; [T] COG2202 FOG: PAS/PAC domain.
    
 0.477
EDZ48028.1
MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; [T] COG2202 FOG: PAS/PAC domain.
    
 0.475
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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