STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ46168.1OmpA/MotB; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (613 aa)    
Predicted Functional Partners:
RBY4I_317
Chemotaxis protein MotA; [N] COG1291 Flagellar motor component.
  
 0.997
EDZ48028.1
MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; [T] COG2202 FOG: PAS/PAC domain.
  
 
 0.990
EDZ46337.1
HWE histidine kinase family; [T] COG2202 FOG: PAS/PAC domain.
  
 
 0.988
EDZ46196.1
MotA/TolQ/ExbB proton channel family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.954
RBY4I_215
CheW protein; [NT] COG0835 Chemotaxis signal transduction protein.
 
 
 0.934
RBY4I_163
Conserved hypothetical protein; [R] COG5263 FOG: Glucan-binding domain (YG repeat).
  
  
 0.915
scpA
Segregation and condensation protein A; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
 
 0.907
EDZ48282.1
ABC transporter substrate binding protein; [Q] COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component.
   
   0.904
EDZ48004.1
Flagellar basal-body rod protein FlgC; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
 
 
 0.884
EDZ46648.1
[T] COG0642 Signal transduction histidine kinase.
  
 0.877
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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