STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ46183.1[S] COG4095 Uncharacterized conserved protein. (83 aa)    
Predicted Functional Partners:
sdh
Saccharopine dehydrogenase; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
       0.773
gst_3
[O] COG0625 Glutathione S-transferase.
       0.773
RBY4I_984
[E] COG1748 Saccharopine dehydrogenase and related proteins.
       0.746
RBY4I_895
Phosphoglycerate mutase family protein; [G] COG0406 Fructose-2,6-bisphosphatase.
       0.705
EDZ47476.1
N-carbamoyl-L-amino acid hydrolase; [R] COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase.
       0.484
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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