STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RBY4I_14Endoribonuclease L-PSP family protein; [J] COG0251 Putative translation initiation inhibitor, yjgF family. (112 aa)    
Predicted Functional Partners:
RBY4I_37
Opine oxidase subunit A; [O] COG0492 Thioredoxin reductase.
 
    0.829
RBY4I_40
Opine oxidase subunit B; [E] COG0665 Glycine/D-amino acid oxidases (deaminating).
 
    0.823
RBY4I_4
Proline dehydrogenase, alpha subunit; [R] COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
 
    0.812
RBY4I_3
DctP; [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
     0.655
RBY4I_50
DctQ; [Q] COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
     0.625
tyrB
[E] COG1448 Aspartate/tyrosine/aromatic aminotransferase.
   
  0.525
tpiA
Triose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
  
   0.519
RBY4I_72
[S] COG4850 Uncharacterized conserved protein.
       0.516
RBY4I_30
DctM; [R] COG4666 TRAP-type uncharacterized transport system, fused permease components.
       0.491
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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