STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_148Serine racemase; [E] COG0031 Cysteine synthase. (317 aa)    
Predicted Functional Partners:
RBY4I_175
Threonine aldolase, low-specificity; [E] COG3616 Predicted amino acid aldolase or racemase.
 
  
  0.941
RBY4I_231
[E] COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog.
 
 
 0.890
sgaA
[E] COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase.
 
 
  0.860
ilvN
[E] COG0440 Acetolactate synthase, small (regulatory) subunit.
  
 0.818
thrC
[E] COG0498 Threonine synthase.
  
 
 0.801
EDZ46354.1
Aminotransferase, class III family; [E] COG4992 Ornithine/acetylornithine aminotransferase.
  
 
 0.720
ilvB
Acetolactate synthase, large subunit, biosynthetic type; [EH] COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase].
  
  0.696
EDZ44955.1
Acetolactate synthase, catabolic, putative; [R] COG3960 Glyoxylate carboligase; Belongs to the TPP enzyme family.
  
  0.696
leuB
3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.
 
 0.675
RBY4I_213
Transcriptional regulator, IclR family; [K] COG1414 Transcriptional regulator.
 
    0.660
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.