STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ46289.1NLP/P60; [M] COG0791 Cell wall-associated hydrolases (invasion-associated proteins). (274 aa)    
Predicted Functional Partners:
pepA_2
[E] COG0260 Leucyl aminopeptidase; Belongs to the peptidase M17 family.
       0.837
fliL
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
   
   0.683
EDZ48438.1
Conserved hypothetical protein.
       0.679
EDZ47711.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.645
EDZ46002.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.588
EDZ45954.1
2-deoxycytidine 5-triphosphate deaminase; [F] COG0717 Deoxycytidine deaminase.
  
     0.584
EDZ45900.1
Hypothetical protein; [S] COG3785 Uncharacterized conserved protein; hemimethylated DNA-binding region.
  
     0.571
EDZ47708.1
Nitrogen-fixing NifU domain protein; [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
  
   
 0.563
EDZ47109.1
Metal dependent phosphohydrolase; [R] COG1896 Predicted hydrolases of HD superfamily.
  
     0.551
EDZ48309.1
GcrA cell cycle regulator; [U] COG0342 Preprotein translocase subunit SecD.
  
     0.528
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.